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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129794828_129799869_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
129794828 - 129799869
Intron Length:
5042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTGCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCCTGCCACA
Flanking Amino Acid:
CTSWHSRYHASCSSHDLSNS
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
81.3
32.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.8
0.63
0.8
72.3
32.4
Minor 5ss
33.3
-1.9
3
43.8
43.9
Minor BPS
43.5
-0.5
2.5
64.68
42

Associated Gene:

Gene:
SHROOM2
Ensembl Gene ID:
ENSAPLG00000029599
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026770
129752855 - 129878259
125405
ENSAPLT00000040267
129754052 - 129859968
105917
ENSAPLT00000027510
129754052 - 129878259
124208