About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129800002_129828197_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
129800002 - 129828197
Intron Length:
28196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTCG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATTAACC
Flanking Amino Acid:
SHKTLKLVVKRRNDLACRPH
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
72.3
40.1
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
89.8
0.9
0.6
88
21.8
Minor 5ss
44.2
-0.6
2.8
56.7
47.6
Minor BPS
73
0.7
1.7
83.79
35.6

Associated Gene:

Gene:
SHROOM2
Ensembl Gene ID:
ENSAPLG00000029599
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040267
129754052 - 129859968
105917
ENSAPLT00000027510
129754052 - 129878259
124208
ENSAPLT00000026770
129752855 - 129878259
125405