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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129828350_129859950_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129828350 - 129859950
Intron Length:
31601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ACCTTAATAATT
Flanking Amino Acid:
MFNFLRIEDGSKAASV
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
78.1
36.3
Major BPS
80
0.75
1
78.6
31
Major PPT
83.9
0.76
0.8
81.1
30.9
Minor 5ss
35.7
-1.6
3
42.9
43.6
Minor BPS
47.7
-0
1.8
63.67
41.1

Associated Gene:

Gene:
SHROOM2
Ensembl Gene ID:
ENSAPLG00000029599
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040267
129754052 - 129859968
105917