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Intron Name: Anas_platyrhynchos_platyrhynchos_1_129828350_129878040_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

129828350 - 129878040

Intron Length:

49691

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGCGC

5'SS Class:

strong_major

3'SS Sequence:

GCTTTCTCTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAT

U12 Branch Point Sequence:

ACCTTAATAATT

Flanking Amino Acid:

EHGEPLIITKIEDGSKAASV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

0.9

63.9

42.4

Major BPS

0.75

78.6

Major PPT

83.9

0.76

0.8

81.1

30.9

Minor 5ss

25.7

-2.8

3.1

32.8

42.2

Minor BPS

47.7

-0

1.8

63.67

41.1

Associated Gene:

Gene:

SHROOM2

Ensembl Gene ID:

ENSAPLG00000029599

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026770

129752855 - 129878259

125405

ENSAPLT00000027510

129754052 - 129878259

124208