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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129892376_129893949_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
129892376 - 129893949
Intron Length:
1574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
AAGCACTCACGT
Flanking Amino Acid:
ISVCDILGGLGVIFRSSVWL
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
74.6
37.4
Major BPS
64.9
0.37
1
67
29.8
Major PPT
83.5
0.75
0.7
82.1
30
Minor 5ss
37.6
-1.4
3.3
50.9
45.8
Minor BPS
38.7
-0.7
2
50.49
42.8

Associated Gene:

Gene:
GPR143
Ensembl Gene ID:
ENSAPLG00000005661
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034520
129892132 - 129906253
14122
ENSAPLT00000005862
129892132 - 129914668
22537