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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129913571_129914664_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
129913571 - 129914664
Intron Length:
1094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
CATTGTATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TACACATTTACT
Flanking Amino Acid:
VNWKAVEGMSR*
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.1
37.5
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
76.1
0.59
1
66.3
43.7
Minor 5ss
37.8
-1.4
3
47.1
48.3
Minor BPS
51.1
0.11
2
71.38
44.7

Associated Gene:

Gene:
GPR143
Ensembl Gene ID:
ENSAPLG00000005661
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005862
129892132 - 129914668
22537