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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129925964_129927096_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
129925964 - 129927096
Intron Length:
1133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
ATGCTTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTGTGTTCAATG
Flanking Amino Acid:
SNPNSNIMLASASFDSTVRL
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
79.7
0.67
0.9
73.7
36.3
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
49
-0.2
2
58.84
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005235
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018015
129923431 - 130049257
125827
ENSAPLT00000005427
129923057 - 130063668
140612