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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129934808_129936328_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129934808 - 129936328
Intron Length:
1521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
CAGTCACTAACC
Flanking Amino Acid:
NYILSAGVDKTTIIWDAHTG
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
72.9
0.52
0.9
66.8
33
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
49.6
-0
2
61.68
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005235
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018015
129923431 - 130049257
125827
ENSAPLT00000005427
129923057 - 130063668
140612