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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129936427_129936529_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
129936427 - 129936529
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTCTTTATTC
Flanking Amino Acid:
DGFARIWTEDGNLASTLGQH
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
74.5
37.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
88.4
0.86
0.7
81.4
35
Minor 5ss
34
-1.8
2.9
42
44.5
Minor BPS
73.1
0.7
1.5
81.83
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005235
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018015
129923431 - 130049257
125827
ENSAPLT00000005427
129923057 - 130063668
140612