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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129939570_129947837_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
129939570 - 129947837
Intron Length:
8268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGACCA
5'SS Class:
major
3'SS Sequence:
ATTGCTTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTGCTTTTATA
Flanking Amino Acid:
WNPVSDLLASGSGDSTARIW
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65.3
40.7
Major BPS
100
1.24
0.5
100
0
Major PPT
78.9
0.65
0.8
73.2
36.7
Minor 5ss
31.8
-2.1
3
32.6
41.5
Minor BPS
57.3
0.22
1.7
68.85
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005235
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018015
129923431 - 130049257
125827
ENSAPLT00000005427
129923057 - 130063668
140612