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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129945502_129947837_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
129945502 - 129947837
Intron Length:
2336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGACCA
5'SS Class:
major
3'SS Sequence:
AATTATTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAATTAT
U12 Branch Point Sequence:
CCATACAGAATT
Flanking Amino Acid:
WNPVSDLLASGDTWWRLR*
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65.3
40.7
Major BPS
59.2
0.23
1.3
52
43.5
Major PPT
74.3
0.55
0.9
71.2
39.6
Minor 5ss
31.8
-2.1
3
32.6
41.5
Minor BPS
45.2
-0.2
1.9
59.7
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005235
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037037
129944516 - 130063668
119153