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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129947971_129954114_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
129947971 - 129954114
Intron Length:
6144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGCCAA
5'SS Class:
major
3'SS Sequence:
TATCTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AATTACTTATTC
Flanking Amino Acid:
NGEENGAHAINNHSKPMEID
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
67.9
39.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
83.5
0.75
0.8
76.9
31.5
Minor 5ss
38.9
-1.2
3.1
47.7
42.3
Minor BPS
57
0.2
1.8
67.23
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005235
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005427
129923057 - 130063668
140612
ENSAPLT00000037037
129944516 - 130063668
119153
ENSAPLT00000018015
129923431 - 130049257
125827