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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129957257_129976817_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
129957257 - 129976817
Intron Length:
19561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCATGTCATG
Flanking Amino Acid:
FLVYRYLQESGFSHSAFTFG
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
27.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.8
0.65
0.8
76.4
32.2
Minor 5ss
38.7
-1.3
3
52
45.2
Minor BPS
40.4
-0.9
2.4
53.07
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005235
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037037
129944516 - 130063668
119153
ENSAPLT00000018015
129923431 - 130049257
125827
ENSAPLT00000005427
129923057 - 130063668
140612