Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_129976926_130014059_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

129976926 - 130014059

Intron Length:

37134

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCCAA

5'SS Class:

strong_major

3'SS Sequence:

TCCCTTTGAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACAAAA

U12 Branch Point Sequence:

TTCCCTTTGAAC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.9

74.1

38.3

Major BPS

51.5

0.04

0.9

57.3

24.9

Major PPT

71.1

0.48

68.2

36.2

Minor 5ss

37.2

-1.4

48.3

Minor BPS

60.2

0.3

1.4

68.17

37.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005235

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037037

129944516 - 130063668

119153

ENSAPLT00000018015

129923431 - 130049257

125827

ENSAPLT00000005427

129923057 - 130063668

140612