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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130014168_130063595_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
130014168 - 130063595
Intron Length:
49428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TCTCTTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TCTCTCTTATTG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.3
34.5
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
85.9
0.81
0.8
81
29.3
Minor 5ss
33.3
-1.9
3.2
36.5
41.7
Minor BPS
55
0.02
1.7
59.89
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005235
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037037
129944516 - 130063668
119153
ENSAPLT00000005427
129923057 - 130063668
140612