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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130206421_130207393_F

Intron Information:

Intron Rank:
129120
Intron Class:
major
Intron Phase:
Intron Coordinates:
130206421 - 130207393
Intron Length:
973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGAAAT
5'SS Class:
major
3'SS Sequence:
AATTCCACTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TACTACTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
0.9
76.8
33.7
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
67
0.38
0.9
57.1
38.9
Minor 5ss
28.3
-2.5
3.2
39
46.4
Minor BPS
57.3
0.31
1.8
73.87
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019461
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025384
130202491 - 130207402
4912