About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130213697_130213819_F

Intron Information:

Intron Rank:
143474
Intron Class:
major
Intron Phase:
Intron Coordinates:
130213697 - 130213819
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAGGTTCT
5'SS Class:
major
3'SS Sequence:
TATTTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.3
72.3
40.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.2
0.75
0.7
77.4
36.6
Minor 5ss
42.8
-0.8
3.1
57.9
40.1
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027295
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044246
130212771 - 130214141
1371
ENSAPLT00000030770
130211268 - 130214089
2822