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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130216666_130267312_F

Intron Information:

Intron Rank:
145339
Intron Class:
major
Intron Phase:
Intron Coordinates:
130216666 - 130267312
Intron Length:
50647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTAACTCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTCTTCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
79
0.65
0.9
70
41
Minor 5ss
36.1
-1.6
2.7
45.8
42.3
Minor BPS
87.3
1.25
0.9
95.32
31.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028350
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048042
130216479 - 130268312
51834