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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130267430_130267593_F

Intron Information:

Intron Rank:
145340
Intron Class:
major
Intron Phase:
Intron Coordinates:
130267430 - 130267593
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTACTATAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.2
85.2
32.2
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
92.7
0.96
0.6
88.1
21.9
Minor 5ss
34
-1.8
3.3
49.7
46.6
Minor BPS
68
0.55
1.6
80.26
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028350
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048042
130216479 - 130268312
51834