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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130395042_130399208_R

Intron Information:

Intron Rank:
140334
Intron Class:
major
Intron Phase:
Intron Coordinates:
130395042 - 130399208
Intron Length:
4167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
CGGTCATTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
79.3
0.66
0.7
75.3
26.9
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
59.9
0.29
1.7
64.12
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022880
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017761
130394553 - 130399956
5404