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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130421429_130424329_F

Intron Information:

Intron Rank:
142174
Intron Class:
major
Intron Phase:
Intron Coordinates:
130421429 - 130424329
Intron Length:
2901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CACTTTCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TATCTCTCAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
1.1
79.1
36.4
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
78.4
0.64
0.8
69.5
36.5
Minor 5ss
32.2
-2
2.8
41.7
44.8
Minor BPS
51.7
0.03
1.8
65.13
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026558
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026986
130420427 - 130424890
4464