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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130425437_130425984_R

Intron Information:

Intron Rank:
154486
Intron Class:
major
Intron Phase:
Intron Coordinates:
130425437 - 130425984
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGAGCT
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GGCTTTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
0.9
71.4
32
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.8
0.87
0.7
88.9
28.2
Minor 5ss
29.3
-2.4
3.4
40
39.8
Minor BPS
54
-0
1.5
53.43
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030648
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040147
130424233 - 130426075
1843