Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130429213_130459408_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

130429213 - 130459408

Intron Length:

30196

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGGCA

5'SS Class:

major

3'SS Sequence:

ATTTGTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

TATTTTATATTT

Flanking Amino Acid:

RISAFFKHFQNNGSLAWCQN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

66.7

39.1

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

87.6

0.84

0.8

85.1

34.9

Minor 5ss

28.1

-2.5

3.6

38.3

46.9

Minor BPS

50.7

0.1

1.8

73.26

38.1

Associated Gene:

Gene:

ANOS1

Ensembl Gene ID:

ENSAPLG00000004552

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031144

130429030 - 130572015

142986

ENSAPLT00000017716

130429030 - 130565802

136773

ENSAPLT00000004716

130429030 - 130566477

137448