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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130459457_130508149_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
130459457 - 130508149
Intron Length:
48693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TGACTCTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
TTTTCCTGACAC
Flanking Amino Acid:
WCQNHKQCSKCLEPCKESWD
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.6
31.5
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
69.8
0.45
0.9
62
39.6
Minor 5ss
47.6
-0.2
2.4
62.3
42.5
Minor BPS
60.9
0.32
1.9
76.84
38.8

Associated Gene:

Gene:
ANOS1
Ensembl Gene ID:
ENSAPLG00000004552
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017716
130429030 - 130565802
136773
ENSAPLT00000034569
130458997 - 130565802
106806
ENSAPLT00000033568
130458997 - 130566477
107481
ENSAPLT00000031144
130429030 - 130572015
142986
ENSAPLT00000025056
130458997 - 130566477
107481