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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130459457_130511464_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
130459457 - 130511464
Intron Length:
52008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCACTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTGTTTTCACT
Flanking Amino Acid:
WCQNHKQCSKPLFPKKNYEC
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.6
31.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.9
0.63
0.8
75.5
34.3
Minor 5ss
47.6
-0.2
2.4
62.3
42.5
Minor BPS
61.3
0.44
1.8
82.56
39.6

Associated Gene:

Gene:
ANOS1
Ensembl Gene ID:
ENSAPLG00000004552
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004716
130429030 - 130566477
137448