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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130511688_130516924_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
130511688 - 130516924
Intron Length:
5237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGATT
5'SS Class:
major
3'SS Sequence:
GTTCCTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
AATTATTCAAAT
Flanking Amino Acid:
TCQVPKNLYKGVPLKPRKEL
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
75.8
39.8
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
80.1
0.68
0.9
73.9
35.4
Minor 5ss
36.2
-1.6
3.7
56.4
48
Minor BPS
50.4
0.09
1.8
70.68
39.5

Associated Gene:

Gene:
ANOS1
Ensembl Gene ID:
ENSAPLG00000004552
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017716
130429030 - 130565802
136773
ENSAPLT00000034569
130458997 - 130565802
106806
ENSAPLT00000004716
130429030 - 130566477
137448
ENSAPLT00000033568
130458997 - 130566477
107481
ENSAPLT00000031144
130429030 - 130572015
142986
ENSAPLT00000025056
130458997 - 130566477
107481