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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130517110_130524655_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
130517110 - 130524655
Intron Length:
7546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TTTTCCCCACCA
Flanking Amino Acid:
DATNWQTVAQTTDERVQLSD
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1.2
81.4
33.4
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
78.4
0.64
0.8
71.7
34.1
Minor 5ss
38.3
-1.3
2.8
51.3
45.1
Minor BPS
53.5
0.11
2.2
76.63
40.3

Associated Gene:

Gene:
ANOS1
Ensembl Gene ID:
ENSAPLG00000004552
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031144
130429030 - 130572015
142986
ENSAPLT00000025056
130458997 - 130566477
107481
ENSAPLT00000017716
130429030 - 130565802
136773
ENSAPLT00000034569
130458997 - 130565802
106806
ENSAPLT00000004716
130429030 - 130566477
137448
ENSAPLT00000033568
130458997 - 130566477
107481