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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130537840_130540588_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
130537840 - 130540588
Intron Length:
2749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
GATTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTTACT
Flanking Amino Acid:
FSTTQDTRNNNNINAMVTLR
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
0.9
82.4
29.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.5
0.78
0.8
81.5
35.8
Minor 5ss
38.1
-1.3
3
53
39
Minor BPS
67.8
0.64
1.8
89.13
35.2

Associated Gene:

Gene:
ANOS1
Ensembl Gene ID:
ENSAPLG00000004552
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031144
130429030 - 130572015
142986
ENSAPLT00000025056
130458997 - 130566477
107481
ENSAPLT00000017716
130429030 - 130565802
136773
ENSAPLT00000004716
130429030 - 130566477
137448
ENSAPLT00000034569
130458997 - 130565802
106806