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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130541908_130558505_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
130541908 - 130558505
Intron Length:
16598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTCCA
5'SS Class:
major
3'SS Sequence:
TTGAACCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTGAACC
Flanking Amino Acid:
LQVKVYWKRTDINMNQFQVH
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.2
65.4
40.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
63.6
0.31
1
60.1
41.4
Minor 5ss
37
-1.5
2.6
43.2
43.7
Minor BPS
74
0.73
1.3
82.67
30.4

Associated Gene:

Gene:
ANOS1
Ensembl Gene ID:
ENSAPLG00000004552
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031144
130429030 - 130572015
142986
ENSAPLT00000025056
130458997 - 130566477
107481
ENSAPLT00000017716
130429030 - 130565802
136773
ENSAPLT00000034569
130458997 - 130565802
106806
ENSAPLT00000004716
130429030 - 130566477
137448
ENSAPLT00000033568
130458997 - 130566477
107481