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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130558601_130561347_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
130558601 - 130561347
Intron Length:
2747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCATCAT
U12 Branch Point Sequence:
TTTCCTGTTACA
Flanking Amino Acid:
GLGKVTELTYENYMILKDLS
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
57.9
0.2
1.4
62
44.2
Major PPT
85.2
0.79
0.8
79.7
32.4
Minor 5ss
41.2
-1
3.1
58.3
39.3
Minor BPS
49.8
-0
2.3
72.64
39.2

Associated Gene:

Gene:
ANOS1
Ensembl Gene ID:
ENSAPLG00000004552
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025056
130458997 - 130566477
107481
ENSAPLT00000017716
130429030 - 130565802
136773
ENSAPLT00000034569
130458997 - 130565802
106806
ENSAPLT00000004716
130429030 - 130566477
137448
ENSAPLT00000033568
130458997 - 130566477
107481
ENSAPLT00000031144
130429030 - 130572015
142986