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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130561520_130562604_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
130561520 - 130562604
Intron Length:
1085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACGT
5'SS Class:
strong_major
3'SS Sequence:
TCCAAATTTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TTTAGCTTATCT
Flanking Amino Acid:
HKHINCPAEGVPVLPKVLAK
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
75.5
40.6
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
68.6
0.42
0.9
61.3
38.8
Minor 5ss
33.7
-1.9
3.2
48.4
47.1
Minor BPS
61
0.42
2.1
84.72
41.8

Associated Gene:

Gene:
ANOS1
Ensembl Gene ID:
ENSAPLG00000004552
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031144
130429030 - 130572015
142986
ENSAPLT00000025056
130458997 - 130566477
107481
ENSAPLT00000017716
130429030 - 130565802
136773
ENSAPLT00000034569
130458997 - 130565802
106806
ENSAPLT00000004716
130429030 - 130566477
137448
ENSAPLT00000033568
130458997 - 130566477
107481