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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130562826_130565568_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
130562826 - 130565568
Intron Length:
2743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
TATTTATTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTG
Flanking Amino Acid:
IISQSQILPADHYVLTVPNL
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
72.9
39.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74
0.54
1
74.6
39.9
Minor 5ss
44.1
-0.6
2.9
63.9
41.5
Minor BPS
53
-0
1.8
62.41
40.1

Associated Gene:

Gene:
ANOS1
Ensembl Gene ID:
ENSAPLG00000004552
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031144
130429030 - 130572015
142986
ENSAPLT00000025056
130458997 - 130566477
107481
ENSAPLT00000017716
130429030 - 130565802
136773
ENSAPLT00000034569
130458997 - 130565802
106806
ENSAPLT00000004716
130429030 - 130566477
137448
ENSAPLT00000033568
130458997 - 130566477
107481