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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130619186_130620191_F

Intron Information:

Intron Rank:
143872
Intron Class:
major
Intron Phase:
Intron Coordinates:
130619186 - 130620191
Intron Length:
1006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTATGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
ATATATAAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.1
75.8
35
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
67.3
0.39
1
66
39.9
Minor 5ss
47
-0.3
2.5
62.8
41.8
Minor BPS
43
-0.4
2
62.67
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027545
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017214
130619111 - 130621179
2069