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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130898248_130898539_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
130898248 - 130898539
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAACA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTGTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTAACCCAATCT
Flanking Amino Acid:
HLAGGVVPQDRVIDGRDLMP
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
67.9
37.1
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
83.3
0.75
0.8
85.5
29.2
Minor 5ss
32
-2.1
3.1
41.5
44.6
Minor BPS
45.9
-0.2
2.2
70.58
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007832
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008180
130896957 - 130911489
14533