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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130898703_130899381_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
130898703 - 130899381
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGATTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTTGATT
Flanking Amino Acid:
QLGGWNGIYRGGKAMGGWEG
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
75.3
0.57
1.1
75.7
37.3
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
77.3
0.94
1
89.84
27.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007832
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008180
130896957 - 130911489
14533