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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130900856_130901938_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
130900856 - 130901938
Intron Length:
1083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
CTCCTAGTAACA
Flanking Amino Acid:
ILRESIAFIERNKHKPFLLF
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
73.5
33.5
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
85.4
0.8
0.7
84.5
30.4
Minor 5ss
42.5
-0.8
3
55.3
48.9
Minor BPS
44.6
-0.4
2.2
57.01
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007832
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008180
130896957 - 130911489
14533