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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130905064_130906483_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
130905064 - 130906483
Intron Length:
1420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGCCTT
5'SS Class:
major
3'SS Sequence:
TTATATTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTATAT
Flanking Amino Acid:
FLTGRYPLRSGMDAINNYRV
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.2
66.5
44.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.9
0.72
0.8
77.6
36.1
Minor 5ss
46.3
-0.4
2.8
65.7
45.4
Minor BPS
52.7
0.16
1.9
76.71
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007832
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008180
130896957 - 130911489
14533