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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130907738_130908298_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
130907738 - 130908298
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATGGAC
U12 Branch Point Sequence:
TTTTCTTCTTCT
Flanking Amino Acid:
AKMIWQLTSYWTSLVTSMIF
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.4
37.3
Major BPS
48
-0.1
1.3
46.8
37.9
Major PPT
82.7
0.74
0.9
80.2
37.3
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
42.4
-0.5
3.7
80.12
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007832
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008180
130896957 - 130911489
14533