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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130930980_130931571_F

Intron Information:

Intron Rank:
124324
Intron Class:
major
Intron Phase:
Intron Coordinates:
130930980 - 130931571
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGATG
5'SS Class:
major
3'SS Sequence:
TTGTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GAGAGCTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
66.2
44.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
80.7
0.69
0.9
73.5
41.9
Minor 5ss
34.6
-1.8
3.5
47.9
47.8
Minor BPS
54.6
0.12
1.9
61.3
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017023
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042499
130927220 - 130932051
4832