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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130956661_130960177_R

Intron Information:

Intron Rank:
153993
Intron Class:
major
Intron Phase:
Intron Coordinates:
130956661 - 130960177
Intron Length:
3517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
AAACATTTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
84.8
32.5
Major BPS
69.8
0.49
1
61
37.5
Major PPT
89.3
0.88
0.6
87.5
22.7
Minor 5ss
38.9
-1.3
2.8
53.8
42.8
Minor BPS
46.7
-0.2
1.7
53.56
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030329
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046646
130956500 - 130962301
5802