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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130981277_130983831_F

Intron Information:

Intron Rank:
150691
Intron Class:
major
Intron Phase:
Intron Coordinates:
130981277 - 130983831
Intron Length:
2555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTAAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
GTTCTTGTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
35.2
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
70.1
0.45
1
63
41.3
Minor 5ss
44.8
-0.6
2.6
56.7
47.6
Minor BPS
48.4
-0
2.1
70.85
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030958
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023139
130980920 - 130984229
3310