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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130981277_130997512_F

Intron Information:

Intron Rank:
150696
Intron Class:
major
Intron Phase:
Intron Coordinates:
130981277 - 130997512
Intron Length:
16236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTACTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TTTGTGTTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
35.2
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
74
0.54
0.9
71
39.5
Minor 5ss
44.8
-0.6
2.6
56.7
47.6
Minor BPS
47.1
-0.2
2.3
65.77
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030958
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041907
130980920 - 130998704
17785