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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_130981277_131004263_F

Intron Information:

Intron Rank:
150692
Intron Class:
major
Intron Phase:
Intron Coordinates:
130981277 - 131004263
Intron Length:
22987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TATGATTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TTACTTAAAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
35.2
Major BPS
75.8
0.64
1
65.8
41
Major PPT
79.9
0.67
0.9
73.4
41.2
Minor 5ss
44.8
-0.6
2.6
56.7
47.6
Minor BPS
43.1
-0.5
1.8
55.42
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030958
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038276
130980920 - 131019431
38512
ENSAPLT00000028690
130980920 - 131005574
24655