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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_131004341_131005257_F

Intron Information:

Intron Rank:
150693
Intron Class:
major
Intron Phase:
Intron Coordinates:
131004341 - 131005257
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCCCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
GTCATATTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
76.8
0.6
0.8
74.7
30.6
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
56.8
0.21
1.7
65.81
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030958
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028690
130980920 - 131005574
24655