Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_131023220_131024765_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

131023220 - 131024765

Intron Length:

1546

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATTAC

5'SS Class:

strong_major

3'SS Sequence:

TCTTTCCTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTCAT

U12 Branch Point Sequence:

TTTTCTTTCCTT

Flanking Amino Acid:

PSKRMIDSLHSSLETRIKVF

Intron Amino Acid Position:

2210

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.88

0.9

80.8

Major BPS

70.9

0.52

1.1

71.4

36.6

Major PPT

89.7

0.89

0.6

84.8

22.9

Minor 5ss

39.8

-1.1

2.9

45.2

Minor BPS

46.1

-0.2

3.6

82.98

39.3

Associated Gene:

Gene:

MXRA5

Ensembl Gene ID:

ENSAPLG00000007795

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024356

131020897 - 131040780

19884

ENSAPLT00000008082

131020906 - 131051904

30999