Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_131034192_131034534_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

131034192 - 131034534

Intron Length:

343

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACGCTC

5'SS Class:

major

3'SS Sequence:

ATTTTTTTTAAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

TTTTTTTTAAAG

Flanking Amino Acid:

GALKDLVSLQVFKISYNKLK

Intron Amino Acid Position:

122

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

1.2

67.8

43.5

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

81.3

0.7

82.7

32.1

Minor 5ss

40.9

-1

3.4

59.1

45.6

Minor BPS

72.6

0.57

1.4

75.95

35.7

Associated Gene:

Gene:

MXRA5

Ensembl Gene ID:

ENSAPLG00000007795

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008082

131020906 - 131051904

30999

ENSAPLT00000024356

131020897 - 131040780

19884