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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_131227047_131231938_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
131227047 - 131231938
Intron Length:
4892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGAGAT
U12 Branch Point Sequence:
TTTTCCTCCCCC
Flanking Amino Acid:
DFGFAKKLVDRTWTLCGTPE
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
56.2
0.16
1.2
52.7
43.2
Major PPT
81.3
0.7
0.7
73.7
31.3
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
43.1
-0.5
3.7
74.56
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007610
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007925
131209936 - 131263923
53988