Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_131232203_131235664_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

131232203 - 131235664

Intron Length:

3462

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTAAGTTGC

5'SS Class:

major

3'SS Sequence:

ATTTTTATTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TATTCAATAAAA

Flanking Amino Acid:

KEVNHPFLIRLFWTYHDERF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.2

0.59

1.1

67.9

38.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

87.1

0.83

0.8

81.5

34.2

Minor 5ss

43.1

-0.8

2.8

58.6

40.3

Minor BPS

54.9

0.15

72.88

37.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007610

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007925

131209936 - 131263923

53988