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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_131235834_131263796_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
131235834 - 131263796
Intron Length:
27963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTCAACTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCTTCAACT
Flanking Amino Acid:
CEKVAKEEEGGTGTFGRVHL
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.5
0.69
0.9
77
36.7
Minor 5ss
41.5
-0.9
2.7
53.7
43.5
Minor BPS
81.2
1.06
1.4
96.32
29.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007610
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007925
131209936 - 131263923
53988