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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_131408002_131408137_F

Intron Information:

Intron Rank:
137603
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
131408002 - 131408137
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTTCTGGT
5'SS Class:
weak_major
3'SS Sequence:
TTACATTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTATTCTCTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.8
0.09
1.3
53.6
43.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
78.9
0.65
0.9
76.9
36.7
Minor 5ss
42.5
-0.8
3
56.3
43.1
Minor BPS
54.9
0.23
1.8
76.49
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024104
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038928
131407676 - 131433404
25729